PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00106g00092.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 520aa    MW: 58385.4 Da    PI: 4.4251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00106g00092.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07261309247
                               SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                                +W++eE++++ ++v   ++      W++ a +++  R+ k+++s+++++
  Peaxi162Scf00106g00092.1 261 EKWSEEEEDIFHEVVFSNPPSlgkdFWNRLAIEFP-SRSKKELVSYYFNV 309
                               69**************988768888**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-4258321IPR009057Homeodomain-like
SMARTSM007173.6E-4259312IPR001005SANT/Myb domain
PfamPF002491.1E-6261309IPR001005SANT/Myb domain
PROSITE profilePS500905.993262310IPR017877Myb-like domain
CDDcd001675.86E-7262310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVQKRPYGDE DLYEVSSKQP RHVEPNSQLV SVLDFFPHES VALKPYVSGG DEGYNKKRDS  60
DNVDKIPFPA QDIETCIDGS ASNSSWPASS TSEEDIRFEV PFDTLRSPEY HPPYRTVIHP  120
REDYFSLLRN SPQKLVPIGP EFQAELPEWG AHGNKDKPIL DGTHETLNLP AQALESDCVD  180
HFGEGIKLAG TCIIGMHNTE LPADNTEIAG AGRVKCSCED AGSMSCVRLH ILEAREKLKT  240
SLGEETFVRL GFYGMGEVVT EKWSEEEEDI FHEVVFSNPP SLGKDFWNRL AIEFPSRSKK  300
ELVSYYFNVF ILRKRAKQNR FDPSNIDSDY DEWQEIDDTV DDEDRMTDGD EDSVVESPEN  360
ENGIGRNYGY DRQAYDVATR EVYKPVGLGG RKGFTDLSAE FPDKLFDTYS RPKSNIQHLH  420
RGFSNEVGYY DGSCMPDAPG LAPEAPLGKT ANGRHWASDF ASMGGDNAHD FVLGPCSAKE  480
WDFGYLSCTK NEFDLLPTCT MIEEVFGDGS WSYKGRDGRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311317LRKRAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497127.10.0PREDICTED: uncharacterized protein LOC107815990
RefseqXP_016497128.10.0PREDICTED: uncharacterized protein LOC107815990
TrEMBLM1D6M80.0M1D6M8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831670.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625